Detailed information of SNP:
|
SNP ID:
sf0204550035(Gbrowse)
Chromosome: chr02 Position: 4550035 |
Major allele:
G
Minor allele: C Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1391 | 95.33% | 4.67% |
| All Indica | 775 | 93.81% | 6.19% |
| All Japonica | 496 | 97.78% | 2.22% |
| Aus | 65 | 93.85% | 6.15% |
| Indica I | 367 | 92.64% | 7.36% |
| Indica II | 206 | 96.60% | 3.40% |
| Indica Intermediate | 202 | 93.07% | 6.93% |
| Temperate Japonica | 335 | 97.31% | 2.69% |
| Tropical Japonica | 94 | 97.87% | 2.13% |
| Japonica Intermediate | 67 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 95.12% | 4.88% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0204550035 | G->C | LOC_Os02g08450(LOC_Os02g08450.1) | Non-Synonymous SNP |