Detailed information of SNP:
|
SNP ID:
sf0204550074(Gbrowse)
Chromosome: chr02 Position: 4550074 |
Major allele:
T
Minor allele: A Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1389 | 82.29% | 17.71% |
| All Indica | 774 | 72.35% | 27.65% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 64 | 56.25% | 43.75% |
| Indica I | 361 | 68.70% | 31.30% |
| Indica II | 210 | 82.38% | 17.62% |
| Indica Intermediate | 203 | 68.47% | 31.53% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 40 | 92.50% | 7.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0204550074 | T->A | LOC_Os02g08450(LOC_Os02g08450.1) | Non-Synonymous SNP |