Detailed information of SNP:
|
SNP ID:
sf0204613788(Gbrowse)
Chromosome: chr02 Position: 4613788 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1406 | 72.12% | 27.88% |
| All Indica | 790 | 52.53% | 47.47% |
| All Japonica | 494 | 99.60% | 0.40% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 374 | 42.25% | 57.75% |
| Indica II | 207 | 65.70% | 34.30% |
| Indica Intermediate | 209 | 57.89% | 42.11% |
| Temperate Japonica | 332 | 99.40% | 0.60% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 63.41% | 36.59% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0204613788 | A->G | INTERGENIC | None |