Detailed information of SNP:
|
SNP ID:
sf0204690295(Gbrowse)
Chromosome: chr02 Position: 4690295 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1418 | 73.41% | 26.59% |
| All Indica | 799 | 99.87% | 0.13% |
| All Japonica | 496 | 26.81% | 73.19% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 211 | 99.53% | 0.47% |
| Temperate Japonica | 335 | 5.37% | 94.63% |
| Tropical Japonica | 94 | 81.91% | 18.09% |
| Japonica Intermediate | 67 | 56.72% | 43.28% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 69.05% | 30.95% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0204690295 | A->G | INTERGENIC | None |