Detailed information of SNP:
|
SNP ID:
sf0204716567(Gbrowse)
Chromosome: chr02 Position: 4716567 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1414 | 61.53% | 38.47% |
| All Indica | 795 | 50.82% | 49.18% |
| All Japonica | 496 | 73.19% | 26.81% |
| Aus | 67 | 85.07% | 14.93% |
| Indica I | 373 | 43.97% | 56.03% |
| Indica II | 213 | 61.97% | 38.03% |
| Indica Intermediate | 209 | 51.67% | 48.33% |
| Temperate Japonica | 335 | 94.63% | 5.37% |
| Tropical Japonica | 93 | 15.05% | 84.95% |
| Japonica Intermediate | 68 | 47.06% | 52.94% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 76.19% | 23.81% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0204716567 | C->T | LOC_Os02g09170(LOC_Os02g09170.3) | UTR_3_PRIME |
| sf0204716567 | C->T | LOC_Os02g09170(LOC_Os02g09170.1) | UTR_3_PRIME |