Detailed information of SNP:
|
SNP ID:
sf0204718283(Gbrowse)
Chromosome: chr02 Position: 4718283 |
Major allele:
G
Minor allele: T Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1225 | 98.61% | 1.39% |
| All Indica | 761 | 99.34% | 0.66% |
| All Japonica | 348 | 96.55% | 3.45% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 359 | 98.89% | 1.11% |
| Indica II | 197 | 99.49% | 0.51% |
| Indica Intermediate | 205 | 100.00% | 0.00% |
| Temperate Japonica | 207 | 95.65% | 4.35% |
| Tropical Japonica | 88 | 97.73% | 2.27% |
| Japonica Intermediate | 53 | 98.11% | 1.89% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 35 | 100.00% | 0.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0204718283 | G->T | LOC_Os02g09180(LOC_Os02g09180.1) | INTRON |