Detailed information of SNP:
|
SNP ID:
sf0204732552(Gbrowse)
Chromosome: chr02 Position: 4732552 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1413 | 55.48% | 44.52% |
| All Indica | 797 | 50.06% | 49.94% |
| All Japonica | 495 | 72.73% | 27.27% |
| Aus | 67 | 4.48% | 95.52% |
| Indica I | 375 | 48.80% | 51.20% |
| Indica II | 211 | 44.55% | 55.45% |
| Indica Intermediate | 211 | 57.82% | 42.18% |
| Temperate Japonica | 335 | 94.03% | 5.97% |
| Tropical Japonica | 93 | 16.13% | 83.87% |
| Japonica Intermediate | 67 | 44.78% | 55.22% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 40 | 55.00% | 45.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0204732552 | C->T | INTERGENIC | None |