Detailed information of SNP:
|
SNP ID:
sf0204782956(Gbrowse)
Chromosome: chr02 Position: 4782956 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1353 | 65.63% | 34.37% |
| All Indica | 747 | 90.76% | 9.24% |
| All Japonica | 487 | 25.05% | 74.95% |
| Aus | 66 | 81.82% | 18.18% |
| Indica I | 342 | 90.64% | 9.36% |
| Indica II | 208 | 91.35% | 8.65% |
| Indica Intermediate | 197 | 90.36% | 9.64% |
| Temperate Japonica | 332 | 5.12% | 94.88% |
| Tropical Japonica | 91 | 80.22% | 19.78% |
| Japonica Intermediate | 64 | 50.00% | 50.00% |
| Group VI/Aromatic | 13 | 100.00% | 0.00% |
| Intermediate | 40 | 52.50% | 47.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0204782956 | T->C | INTERGENIC | None |