Detailed information of SNP:
|
SNP ID:
sf0204817969(Gbrowse)
Chromosome: chr02 Position: 4817969 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1280 | 70.31% | 29.69% |
| All Indica | 741 | 99.46% | 0.54% |
| All Japonica | 493 | 26.77% | 73.23% |
| Aus | 12 | 91.67% | 8.33% |
| Indica I | 374 | 100.00% | 0.00% |
| Indica II | 167 | 98.80% | 1.20% |
| Indica Intermediate | 200 | 99.00% | 1.00% |
| Temperate Japonica | 335 | 5.67% | 94.33% |
| Tropical Japonica | 94 | 85.11% | 14.89% |
| Japonica Intermediate | 64 | 51.56% | 48.44% |
| Group VI/Aromatic | 0 | 0.00% | 100.00% |
| Intermediate | 34 | 58.82% | 41.18% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0204817969 | A->G | INTERGENIC | None |