Detailed information of SNP:
|
SNP ID:
sf0204849017(Gbrowse)
Chromosome: chr02 Position: 4849017 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1406 | 58.25% | 41.75% |
| All Indica | 788 | 52.79% | 47.21% |
| All Japonica | 497 | 74.65% | 25.35% |
| Aus | 66 | 13.64% | 86.36% |
| Indica I | 369 | 54.47% | 45.53% |
| Indica II | 209 | 44.02% | 55.98% |
| Indica Intermediate | 210 | 58.57% | 41.43% |
| Temperate Japonica | 335 | 94.33% | 5.67% |
| Tropical Japonica | 94 | 25.53% | 74.47% |
| Japonica Intermediate | 68 | 45.59% | 54.41% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 41 | 56.10% | 43.90% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0204849017 | G->A | LOC_Os02g09450(LOC_Os02g09450.3) | INTRON |
| sf0204849017 | G->A | LOC_Os02g09450(LOC_Os02g09450.1) | INTRON |