Detailed information of SNP:
|
SNP ID:
sf0204862892(Gbrowse)
Chromosome: chr02 Position: 4862892 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1418 | 51.34% | 48.66% |
| All Indica | 798 | 70.43% | 29.57% |
| All Japonica | 497 | 23.14% | 76.86% |
| Aus | 67 | 28.36% | 71.64% |
| Indica I | 375 | 79.73% | 20.27% |
| Indica II | 212 | 50.47% | 49.53% |
| Indica Intermediate | 211 | 73.93% | 26.07% |
| Temperate Japonica | 335 | 5.97% | 94.03% |
| Tropical Japonica | 94 | 64.89% | 35.11% |
| Japonica Intermediate | 68 | 50.00% | 50.00% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 45.24% | 54.76% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0204862892 | T->C | INTERGENIC | None |