Detailed information of SNP:
|
SNP ID:
sf0204866144(Gbrowse)
Chromosome: chr02 Position: 4866144 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1416 | 61.44% | 38.56% |
| All Indica | 798 | 87.84% | 12.16% |
| All Japonica | 497 | 22.94% | 77.06% |
| Aus | 66 | 31.82% | 68.18% |
| Indica I | 375 | 99.73% | 0.27% |
| Indica II | 212 | 65.09% | 34.91% |
| Indica Intermediate | 211 | 89.57% | 10.43% |
| Temperate Japonica | 335 | 5.67% | 94.33% |
| Tropical Japonica | 94 | 65.96% | 34.04% |
| Japonica Intermediate | 68 | 48.53% | 51.47% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 41 | 51.22% | 48.78% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0204866144 | C->T | INTERGENIC | None |