Detailed information of SNP:
|
SNP ID:
sf0204867196(Gbrowse)
Chromosome: chr02 Position: 4867196 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1413 | 50.04% | 49.96% |
| All Indica | 793 | 32.03% | 67.97% |
| All Japonica | 497 | 76.86% | 23.14% |
| Aus | 67 | 71.64% | 28.36% |
| Indica I | 373 | 23.32% | 76.68% |
| Indica II | 211 | 51.66% | 48.34% |
| Indica Intermediate | 209 | 27.75% | 72.25% |
| Temperate Japonica | 335 | 94.33% | 5.67% |
| Tropical Japonica | 94 | 34.04% | 65.96% |
| Japonica Intermediate | 68 | 50.00% | 50.00% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 42 | 52.38% | 47.62% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0204867196 | G->A | INTERGENIC | None |