Detailed information of SNP:
|
SNP ID:
sf0204867228(Gbrowse)
Chromosome: chr02 Position: 4867228 |
Major allele:
C
Minor allele: A Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1409 | 50.96% | 49.04% |
| All Indica | 791 | 69.41% | 30.59% |
| All Japonica | 497 | 23.34% | 76.66% |
| Aus | 65 | 29.23% | 70.77% |
| Indica I | 371 | 78.98% | 21.02% |
| Indica II | 211 | 48.82% | 51.18% |
| Indica Intermediate | 209 | 73.21% | 26.79% |
| Temperate Japonica | 335 | 5.97% | 94.03% |
| Tropical Japonica | 94 | 65.96% | 34.04% |
| Japonica Intermediate | 68 | 50.00% | 50.00% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 50.00% | 50.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0204867228 | C->A | INTERGENIC | None |