Detailed information of SNP:
|
SNP ID:
sf0204901078(Gbrowse)
Chromosome: chr02 Position: 4901078 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1415 | 74.28% | 25.72% |
| All Indica | 798 | 99.62% | 0.38% |
| All Japonica | 495 | 28.48% | 71.52% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 99.06% | 0.94% |
| Indica Intermediate | 210 | 99.52% | 0.48% |
| Temperate Japonica | 333 | 9.01% | 90.99% |
| Tropical Japonica | 94 | 94.68% | 5.32% |
| Japonica Intermediate | 68 | 32.35% | 67.65% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 82.93% | 17.07% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0204901078 | T->C | INTERGENIC | None |