Detailed information of SNP:
|
SNP ID:
sf0204904933(Gbrowse)
Chromosome: chr02 Position: 4904933 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1415 | 69.75% | 30.25% |
| All Indica | 797 | 64.74% | 35.26% |
| All Japonica | 495 | 72.73% | 27.27% |
| Aus | 67 | 94.03% | 5.97% |
| Indica I | 375 | 66.67% | 33.33% |
| Indica II | 213 | 69.48% | 30.52% |
| Indica Intermediate | 209 | 56.46% | 43.54% |
| Temperate Japonica | 334 | 92.22% | 7.78% |
| Tropical Japonica | 94 | 5.32% | 94.68% |
| Japonica Intermediate | 67 | 70.15% | 29.85% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 80.95% | 19.05% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0204904933 | G->A | INTERGENIC | None |