Detailed information of SNP:
|
SNP ID:
sf0204918485(Gbrowse)
Chromosome: chr02 Position: 4918485 |
Major allele:
G
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1402 | 73.04% | 26.96% |
| All Indica | 788 | 98.48% | 1.52% |
| All Japonica | 491 | 27.29% | 72.71% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 368 | 97.83% | 2.17% |
| Indica II | 213 | 98.12% | 1.88% |
| Indica Intermediate | 207 | 100.00% | 0.00% |
| Temperate Japonica | 329 | 7.29% | 92.71% |
| Tropical Japonica | 94 | 93.62% | 6.38% |
| Japonica Intermediate | 68 | 32.35% | 67.65% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 78.57% | 21.43% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0204918485 | T->G | LOC_Os02g09550(LOC_Os02g09550.1) | INTRON |