Detailed information of SNP:
|
SNP ID:
sf0204941078(Gbrowse)
Chromosome: chr02 Position: 4941078 |
Major allele:
T
Minor allele: A Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1347 | 98.07% | 1.93% |
| All Indica | 799 | 100.00% | 0.00% |
| All Japonica | 427 | 93.91% | 6.09% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 211 | 100.00% | 0.00% |
| Temperate Japonica | 277 | 90.97% | 9.03% |
| Tropical Japonica | 92 | 100.00% | 0.00% |
| Japonica Intermediate | 58 | 98.28% | 1.72% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 40 | 100.00% | 0.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0204941078 | T->A | LOC_Os02g09600(LOC_Os02g09600.3) | INTRON |
| sf0204941078 | T->A | LOC_Os02g09600(LOC_Os02g09600.1) | INTRON |
| sf0204941078 | T->A | LOC_Os02g09600(LOC_Os02g09600.2) | INTRON |