Detailed information of SNP:
|
SNP ID:
sf0205011589(Gbrowse)
Chromosome: chr02 Position: 5011589 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1382 | 93.34% | 6.66% |
| All Indica | 766 | 96.48% | 3.52% |
| All Japonica | 497 | 99.60% | 0.40% |
| Aus | 65 | 35.38% | 64.62% |
| Indica I | 375 | 99.73% | 0.27% |
| Indica II | 184 | 90.22% | 9.78% |
| Indica Intermediate | 207 | 96.14% | 3.86% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 97.06% | 2.94% |
| Group VI/Aromatic | 14 | 21.43% | 78.57% |
| Intermediate | 40 | 75.00% | 25.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0205011589 | T->C | INTERGENIC | None |