Detailed information of SNP:
|
SNP ID:
sf0205031934(Gbrowse)
Chromosome: chr02 Position: 5031934 |
Major allele:
T
Minor allele: A Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1158 | 87.74% | 12.26% |
| All Indica | 791 | 99.37% | 0.63% |
| All Japonica | 253 | 47.04% | 52.96% |
| Aus | 66 | 100.00% | 0.00% |
| Indica I | 373 | 99.73% | 0.27% |
| Indica II | 212 | 100.00% | 0.00% |
| Indica Intermediate | 206 | 98.06% | 1.94% |
| Temperate Japonica | 177 | 40.11% | 59.89% |
| Tropical Japonica | 46 | 69.57% | 30.43% |
| Japonica Intermediate | 30 | 53.33% | 46.67% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 34 | 91.18% | 8.82% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0205031934 | T->A | INTERGENIC | None |