Detailed information of SNP:
|
SNP ID:
sf0205034597(Gbrowse)
Chromosome: chr02 Position: 5034597 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1419 | 69.20% | 30.80% |
| All Indica | 799 | 57.20% | 42.80% |
| All Japonica | 497 | 99.60% | 0.40% |
| Aus | 67 | 5.97% | 94.03% |
| Indica I | 375 | 63.20% | 36.80% |
| Indica II | 213 | 34.74% | 65.26% |
| Indica Intermediate | 211 | 69.19% | 30.81% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 97.06% | 2.94% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 42 | 61.90% | 38.10% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0205034597 | A->G | INTERGENIC | None |