Detailed information of SNP:
|
SNP ID:
sf0205035626(Gbrowse)
Chromosome: chr02 Position: 5035626 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1325 | 88.00% | 12.00% |
| All Indica | 733 | 87.45% | 12.55% |
| All Japonica | 497 | 99.60% | 0.40% |
| Aus | 48 | 10.42% | 89.58% |
| Indica I | 374 | 99.73% | 0.27% |
| Indica II | 157 | 59.24% | 40.76% |
| Indica Intermediate | 202 | 86.63% | 13.37% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 97.06% | 2.94% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 33 | 75.76% | 24.24% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0205035626 | A->G | INTERGENIC | None |