Detailed information of SNP:
SNP ID:
sf0205036606(Gbrowse)
Chromosome: chr02 Position: 5036606 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
---|---|---|---|
All | 1416 | 91.31% | 8.69% |
All Indica | 796 | 92.71% | 7.29% |
All Japonica | 497 | 99.60% | 0.40% |
Aus | 67 | 35.82% | 64.18% |
Indica I | 375 | 100.00% | 0.00% |
Indica II | 210 | 79.52% | 20.48% |
Indica Intermediate | 211 | 92.89% | 7.11% |
Temperate Japonica | 335 | 100.00% | 0.00% |
Tropical Japonica | 94 | 100.00% | 0.00% |
Japonica Intermediate | 68 | 97.06% | 2.94% |
Group VI/Aromatic | 14 | 0.00% | 100.00% |
Intermediate | 42 | 85.71% | 14.29% |
Allele Var Effect:
SNP ID | Var | Gene | Effect/Location |
---|---|---|---|
sf0205036606 | G->A | INTERGENIC | None |