Detailed information of SNP:
|
SNP ID:
sf0205039937(Gbrowse)
Chromosome: chr02 Position: 5039937 |
Major allele:
T
Minor allele: G Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1418 | 94.29% | 5.71% |
| All Indica | 798 | 89.97% | 10.03% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 212 | 72.17% | 27.83% |
| Indica Intermediate | 211 | 90.05% | 9.95% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 97.62% | 2.38% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0205039937 | T->G | LOC_Os02g09770(LOC_Os02g09770.1) | INTRON |
| sf0205039937 | T->G | LOC_Os02g09770(LOC_Os02g09770.3) | INTRON |
| sf0205039937 | T->G | LOC_Os02g09770(LOC_Os02g09770.4) | INTRON |
| sf0205039937 | T->G | LOC_Os02g09770(LOC_Os02g09770.2) | INTRON |