Detailed information of SNP:
|
SNP ID:
sf0205050885(Gbrowse)
Chromosome: chr02 Position: 5050885 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1341 | 96.79% | 3.21% |
| All Indica | 783 | 100.00% | 0.00% |
| All Japonica | 439 | 90.21% | 9.79% |
| Aus | 66 | 100.00% | 0.00% |
| Indica I | 366 | 100.00% | 0.00% |
| Indica II | 210 | 100.00% | 0.00% |
| Indica Intermediate | 207 | 100.00% | 0.00% |
| Temperate Japonica | 296 | 86.49% | 13.51% |
| Tropical Japonica | 82 | 100.00% | 0.00% |
| Japonica Intermediate | 61 | 95.08% | 4.92% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 39 | 100.00% | 0.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0205050885 | G->A | LOC_Os02g09790(LOC_Os02g09790.1) | Synonymous |