Detailed information of SNP:
|
SNP ID:
sf0205080705(Gbrowse)
Chromosome: chr02 Position: 5080705 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1416 | 91.10% | 8.90% |
| All Indica | 798 | 92.48% | 7.52% |
| All Japonica | 497 | 99.60% | 0.40% |
| Aus | 67 | 34.33% | 65.67% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 212 | 77.83% | 22.17% |
| Indica Intermediate | 211 | 93.84% | 6.16% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 97.06% | 2.94% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 40 | 85.00% | 15.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0205080705 | A->G | INTERGENIC | None |