Detailed information of SNP:
|
SNP ID:
sf0205081509(Gbrowse)
Chromosome: chr02 Position: 5081509 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1415 | 88.34% | 11.66% |
| All Indica | 796 | 84.92% | 15.08% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 66 | 63.64% | 36.36% |
| Indica I | 375 | 99.73% | 0.27% |
| Indica II | 210 | 53.81% | 46.19% |
| Indica Intermediate | 211 | 89.57% | 10.43% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 14.29% | 85.71% |
| Intermediate | 42 | 78.57% | 21.43% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0205081509 | C->T | INTERGENIC | None |