Detailed information of SNP:
|
SNP ID:
sf0205087715(Gbrowse)
Chromosome: chr02 Position: 5087715 |
Major allele:
G
Minor allele: C Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1419 | 79.35% | 20.65% |
| All Indica | 799 | 75.47% | 24.53% |
| All Japonica | 497 | 99.60% | 0.40% |
| Aus | 67 | 2.99% | 97.01% |
| Indica I | 375 | 94.67% | 5.33% |
| Indica II | 213 | 41.31% | 58.69% |
| Indica Intermediate | 211 | 75.83% | 24.17% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 97.06% | 2.94% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 42 | 61.90% | 38.10% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0205087715 | G->C | INTERGENIC | None |