Detailed information of SNP:
|
SNP ID:
sf0205094539(Gbrowse)
Chromosome: chr02 Position: 5094539 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1355 | 95.94% | 4.06% |
| All Indica | 737 | 93.08% | 6.92% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 65 | 96.92% | 3.08% |
| Indica I | 354 | 97.18% | 2.82% |
| Indica II | 193 | 87.56% | 12.44% |
| Indica Intermediate | 190 | 91.05% | 8.95% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 95.24% | 4.76% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0205094539 | C->T | INTERGENIC | None |