Detailed information of SNP:
|
SNP ID:
sf0205099246(Gbrowse)
Chromosome: chr02 Position: 5099246 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1413 | 53.86% | 46.14% |
| All Indica | 796 | 30.90% | 69.10% |
| All Japonica | 496 | 98.39% | 1.61% |
| Aus | 67 | 14.93% | 85.07% |
| Indica I | 373 | 40.75% | 59.25% |
| Indica II | 212 | 17.45% | 82.55% |
| Indica Intermediate | 211 | 27.01% | 72.99% |
| Temperate Japonica | 335 | 99.10% | 0.90% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 67 | 94.03% | 5.97% |
| Group VI/Aromatic | 13 | 0.00% | 100.00% |
| Intermediate | 41 | 41.46% | 58.54% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0205099246 | T->C | INTERGENIC | None |