Detailed information of SNP:
|
SNP ID:
sf0205107718(Gbrowse)
Chromosome: chr02 Position: 5107718 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1419 | 94.36% | 5.64% |
| All Indica | 799 | 96.75% | 3.25% |
| All Japonica | 497 | 99.40% | 0.60% |
| Aus | 67 | 38.81% | 61.19% |
| Indica I | 375 | 95.73% | 4.27% |
| Indica II | 213 | 98.12% | 1.88% |
| Indica Intermediate | 211 | 97.16% | 2.84% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 97.06% | 2.94% |
| Group VI/Aromatic | 14 | 85.71% | 14.29% |
| Intermediate | 42 | 80.95% | 19.05% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0205107718 | G->A | INTERGENIC | None |