Detailed information of SNP:
|
SNP ID:
sf0205136366(Gbrowse)
Chromosome: chr02 Position: 5136366 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1405 | 96.44% | 3.56% |
| All Indica | 785 | 93.63% | 6.37% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 367 | 93.19% | 6.81% |
| Indica II | 212 | 93.87% | 6.13% |
| Indica Intermediate | 206 | 94.17% | 5.83% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 100.00% | 0.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0205136366 | C->T | INTERGENIC | None |