Detailed information of SNP:
|
SNP ID:
sf0205155352(Gbrowse)
Chromosome: chr02 Position: 5155352 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1417 | 84.33% | 15.67% |
| All Indica | 797 | 84.19% | 15.81% |
| All Japonica | 497 | 99.20% | 0.80% |
| Aus | 67 | 7.46% | 92.54% |
| Indica I | 375 | 99.47% | 0.53% |
| Indica II | 212 | 52.83% | 47.17% |
| Indica Intermediate | 210 | 88.57% | 11.43% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 95.59% | 4.41% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 42 | 61.90% | 38.10% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0205155352 | G->A | LOC_Os02g09930(LOC_Os02g09930.2) | INTRON |
| sf0205155352 | G->A | LOC_Os02g09930(LOC_Os02g09930.1) | INTRON |