Detailed information of SNP:
|
SNP ID:
sf0205189043(Gbrowse)
Chromosome: chr02 Position: 5189043 |
Major allele:
A
Minor allele: C Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1382 | 98.34% | 1.66% |
| All Indica | 779 | 97.43% | 2.57% |
| All Japonica | 496 | 99.80% | 0.20% |
| Aus | 53 | 100.00% | 0.00% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 195 | 91.28% | 8.72% |
| Indica Intermediate | 209 | 98.56% | 1.44% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 67 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 40 | 95.00% | 5.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0205189043 | A->C | LOC_Os02g09980(LOC_Os02g09980.1) | UTR_3_PRIME |