Detailed information of SNP:
|
SNP ID:
sf0205235089(Gbrowse)
Chromosome: chr02 Position: 5235089 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1393 | 59.30% | 40.70% |
| All Indica | 773 | 39.72% | 60.28% |
| All Japonica | 497 | 98.79% | 1.21% |
| Aus | 67 | 10.45% | 89.55% |
| Indica I | 360 | 60.28% | 39.72% |
| Indica II | 208 | 17.79% | 82.21% |
| Indica Intermediate | 205 | 25.85% | 74.15% |
| Temperate Japonica | 335 | 98.81% | 1.19% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 97.06% | 2.94% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 42 | 50.00% | 50.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0205235089 | C->T | INTERGENIC | None |