Detailed information of SNP:
|
SNP ID:
sf0205279784(Gbrowse)
Chromosome: chr02 Position: 5279784 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1416 | 68.50% | 31.50% |
| All Indica | 796 | 48.24% | 51.76% |
| All Japonica | 497 | 95.57% | 4.43% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 373 | 54.69% | 45.31% |
| Indica II | 213 | 56.34% | 43.66% |
| Indica Intermediate | 210 | 28.57% | 71.43% |
| Temperate Japonica | 335 | 95.52% | 4.48% |
| Tropical Japonica | 94 | 94.68% | 5.32% |
| Japonica Intermediate | 68 | 97.06% | 2.94% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 73.81% | 26.19% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0205279784 | T->C | LOC_Os02g10120(LOC_Os02g10120.1) | INTRON |