Detailed information of SNP:
|
SNP ID:
sf0205280157(Gbrowse)
Chromosome: chr02 Position: 5280157 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1416 | 51.55% | 48.45% |
| All Indica | 796 | 30.53% | 69.47% |
| All Japonica | 497 | 94.77% | 5.23% |
| Aus | 67 | 0.00% | 100.00% |
| Indica I | 372 | 49.73% | 50.27% |
| Indica II | 213 | 10.80% | 89.20% |
| Indica Intermediate | 211 | 16.59% | 83.41% |
| Temperate Japonica | 335 | 95.22% | 4.78% |
| Tropical Japonica | 94 | 94.68% | 5.32% |
| Japonica Intermediate | 68 | 92.65% | 7.35% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 42 | 38.10% | 61.90% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0205280157 | T->C | LOC_Os02g10120(LOC_Os02g10120.1) | INTRON |