Detailed information of SNP:
|
SNP ID:
sf0205283914(Gbrowse)
Chromosome: chr02 Position: 5283914 |
Major allele:
C
Minor allele: G Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1418 | 50.71% | 49.29% |
| All Indica | 798 | 28.57% | 71.43% |
| All Japonica | 497 | 95.37% | 4.63% |
| Aus | 67 | 4.48% | 95.52% |
| Indica I | 374 | 48.13% | 51.87% |
| Indica II | 213 | 10.33% | 89.67% |
| Indica Intermediate | 211 | 12.32% | 87.68% |
| Temperate Japonica | 335 | 95.52% | 4.48% |
| Tropical Japonica | 94 | 94.68% | 5.32% |
| Japonica Intermediate | 68 | 95.59% | 4.41% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 42 | 33.33% | 66.67% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0205283914 | C->G | INTERGENIC | None |