Detailed information of SNP:
|
SNP ID:
sf0205284067(Gbrowse)
Chromosome: chr02 Position: 5284067 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1221 | 94.51% | 5.49% |
| All Indica | 737 | 91.04% | 8.96% |
| All Japonica | 365 | 99.73% | 0.27% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 324 | 84.88% | 15.12% |
| Indica II | 206 | 97.09% | 2.91% |
| Indica Intermediate | 207 | 94.69% | 5.31% |
| Temperate Japonica | 241 | 100.00% | 0.00% |
| Tropical Japonica | 75 | 100.00% | 0.00% |
| Japonica Intermediate | 49 | 97.96% | 2.04% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 38 | 100.00% | 0.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0205284067 | A->G | INTERGENIC | None |