Detailed information of SNP:
|
SNP ID:
sf0205284796(Gbrowse)
Chromosome: chr02 Position: 5284796 |
Major allele:
A
Minor allele: T Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1418 | 50.56% | 49.44% |
| All Indica | 798 | 28.70% | 71.30% |
| All Japonica | 497 | 94.97% | 5.03% |
| Aus | 67 | 4.48% | 95.52% |
| Indica I | 374 | 48.66% | 51.34% |
| Indica II | 213 | 10.33% | 89.67% |
| Indica Intermediate | 211 | 11.85% | 88.15% |
| Temperate Japonica | 335 | 95.22% | 4.78% |
| Tropical Japonica | 94 | 94.68% | 5.32% |
| Japonica Intermediate | 68 | 94.12% | 5.88% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 42 | 30.95% | 69.05% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0205284796 | A->T | INTERGENIC | None |