Detailed information of SNP:



SNP ID: sf0205284796(Gbrowse)

Chromosome: chr02

Position: 5284796
Major allele: A

Minor allele: T

Reference allele: A

Allele Frequencies:


NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.


PopulationsPopulation SizeFrequency of A(major allele)Frequency of T(minor allele)
All1418 50.56% 49.44%
All Indica798 28.70% 71.30%
All Japonica497 94.97% 5.03%
Aus67 4.48% 95.52%
Indica I374 48.66% 51.34%
Indica II213 10.33% 89.67%
Indica Intermediate211 11.85% 88.15%
Temperate Japonica335 95.22% 4.78%
Tropical Japonica94 94.68% 5.32%
Japonica Intermediate68 94.12% 5.88%
Group VI/Aromatic14 0.00% 100.00%
Intermediate42 30.95% 69.05%

Allele Var Effect:


SNP ID Var Gene Effect/Location
sf0205284796 A->T INTERGENIC None