Detailed information of SNP:
|
SNP ID:
sf0205285313(Gbrowse)
Chromosome: chr02 Position: 5285313 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1417 | 52.15% | 47.85% |
| All Indica | 797 | 28.73% | 71.27% |
| All Japonica | 497 | 98.59% | 1.41% |
| Aus | 67 | 5.97% | 94.03% |
| Indica I | 373 | 48.79% | 51.21% |
| Indica II | 213 | 10.33% | 89.67% |
| Indica Intermediate | 211 | 11.85% | 88.15% |
| Temperate Japonica | 335 | 98.51% | 1.49% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 97.06% | 2.94% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 42 | 38.10% | 61.90% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0205285313 | G->A | INTERGENIC | None |