Detailed information of SNP:
|
SNP ID:
sf0205285482(Gbrowse)
Chromosome: chr02 Position: 5285482 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1411 | 83.27% | 16.73% |
| All Indica | 796 | 85.55% | 14.45% |
| All Japonica | 495 | 93.54% | 6.46% |
| Aus | 65 | 9.23% | 90.77% |
| Indica I | 375 | 98.40% | 1.60% |
| Indica II | 212 | 57.55% | 42.45% |
| Indica Intermediate | 209 | 90.91% | 9.09% |
| Temperate Japonica | 333 | 96.10% | 3.90% |
| Tropical Japonica | 94 | 84.04% | 15.96% |
| Japonica Intermediate | 68 | 94.12% | 5.88% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 41 | 60.98% | 39.02% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0205285482 | T->C | INTERGENIC | None |