Detailed information of SNP:
|
SNP ID:
sf0205285712(Gbrowse)
Chromosome: chr02 Position: 5285712 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1418 | 50.49% | 49.51% |
| All Indica | 798 | 71.55% | 28.45% |
| All Japonica | 497 | 7.44% | 92.56% |
| Aus | 67 | 95.52% | 4.48% |
| Indica I | 374 | 51.60% | 48.40% |
| Indica II | 213 | 89.67% | 10.33% |
| Indica Intermediate | 211 | 88.63% | 11.37% |
| Temperate Japonica | 335 | 5.07% | 94.93% |
| Tropical Japonica | 94 | 15.96% | 84.04% |
| Japonica Intermediate | 68 | 7.35% | 92.65% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 71.43% | 28.57% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0205285712 | C->T | INTERGENIC | None |