Detailed information of SNP:
|
SNP ID:
sf0205285976(Gbrowse)
Chromosome: chr02 Position: 5285976 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1418 | 50.42% | 49.58% |
| All Indica | 798 | 71.43% | 28.57% |
| All Japonica | 497 | 7.44% | 92.56% |
| Aus | 67 | 95.52% | 4.48% |
| Indica I | 374 | 51.60% | 48.40% |
| Indica II | 213 | 89.67% | 10.33% |
| Indica Intermediate | 211 | 88.15% | 11.85% |
| Temperate Japonica | 335 | 4.78% | 95.22% |
| Tropical Japonica | 94 | 17.02% | 82.98% |
| Japonica Intermediate | 68 | 7.35% | 92.65% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 71.43% | 28.57% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0205285976 | A->G | INTERGENIC | None |