Detailed information of SNP:
|
SNP ID:
sf0205289079(Gbrowse)
Chromosome: chr02 Position: 5289079 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1221 | 85.34% | 14.66% |
| All Indica | 606 | 70.79% | 29.21% |
| All Japonica | 496 | 100.00% | 0.00% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 291 | 76.98% | 23.02% |
| Indica II | 179 | 77.65% | 22.35% |
| Indica Intermediate | 136 | 48.53% | 51.47% |
| Temperate Japonica | 334 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 38 | 94.74% | 5.26% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0205289079 | A->G | INTERGENIC | None |