Detailed information of SNP:
|
SNP ID:
sf0205289389(Gbrowse)
Chromosome: chr02 Position: 5289389 |
Major allele:
T
Minor allele: A Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1417 | 52.43% | 47.57% |
| All Indica | 797 | 29.11% | 70.89% |
| All Japonica | 497 | 98.79% | 1.21% |
| Aus | 67 | 5.97% | 94.03% |
| Indica I | 374 | 48.93% | 51.07% |
| Indica II | 212 | 10.85% | 89.15% |
| Indica Intermediate | 211 | 12.32% | 87.68% |
| Temperate Japonica | 335 | 99.10% | 0.90% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 97.06% | 2.94% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 42 | 38.10% | 61.90% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0205289389 | T->A | INTERGENIC | None |