Detailed information of SNP:
|
SNP ID:
sf0205292052(Gbrowse)
Chromosome: chr02 Position: 5292052 |
Major allele:
T
Minor allele: A Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1413 | 52.87% | 47.13% |
| All Indica | 794 | 29.47% | 70.53% |
| All Japonica | 497 | 98.99% | 1.01% |
| Aus | 66 | 7.58% | 92.42% |
| Indica I | 374 | 49.20% | 50.80% |
| Indica II | 209 | 11.00% | 89.00% |
| Indica Intermediate | 211 | 12.80% | 87.20% |
| Temperate Japonica | 335 | 99.10% | 0.90% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 97.06% | 2.94% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 42 | 38.10% | 61.90% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0205292052 | T->A | INTERGENIC | None |