Detailed information of SNP:
|
SNP ID:
sf0205292200(Gbrowse)
Chromosome: chr02 Position: 5292200 |
Major allele:
C
Minor allele: A Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1417 | 52.36% | 47.64% |
| All Indica | 797 | 28.98% | 71.02% |
| All Japonica | 497 | 98.99% | 1.01% |
| Aus | 67 | 5.97% | 94.03% |
| Indica I | 373 | 49.06% | 50.94% |
| Indica II | 213 | 10.33% | 89.67% |
| Indica Intermediate | 211 | 12.32% | 87.68% |
| Temperate Japonica | 335 | 99.10% | 0.90% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 97.06% | 2.94% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 42 | 35.71% | 64.29% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0205292200 | C->A | INTERGENIC | None |