Detailed information of SNP:
|
SNP ID:
sf0205293171(Gbrowse)
Chromosome: chr02 Position: 5293171 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1340 | 92.16% | 7.84% |
| All Indica | 766 | 86.55% | 13.45% |
| All Japonica | 453 | 99.56% | 0.44% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 346 | 77.46% | 22.54% |
| Indica II | 212 | 95.28% | 4.72% |
| Indica Intermediate | 208 | 92.79% | 7.21% |
| Temperate Japonica | 304 | 100.00% | 0.00% |
| Tropical Japonica | 88 | 100.00% | 0.00% |
| Japonica Intermediate | 61 | 96.72% | 3.28% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 40 | 100.00% | 0.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0205293171 | C->T | INTERGENIC | None |