Detailed information of SNP:
|
SNP ID:
sf0205295835(Gbrowse)
Chromosome: chr02 Position: 5295835 |
Major allele:
A
Minor allele: C Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1417 | 52.29% | 47.71% |
| All Indica | 797 | 28.86% | 71.14% |
| All Japonica | 497 | 98.59% | 1.41% |
| Aus | 67 | 5.97% | 94.03% |
| Indica I | 375 | 48.80% | 51.20% |
| Indica II | 211 | 10.43% | 89.57% |
| Indica Intermediate | 211 | 11.85% | 88.15% |
| Temperate Japonica | 335 | 98.81% | 1.19% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 97.06% | 2.94% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 42 | 40.48% | 59.52% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0205295835 | A->C | INTERGENIC | None |